#!/bin/bash 
# create a sample collection

n=32
prefix="s"

mkdir s32

for (( i=0; i<$n; i++ ))
do
  f=$prefix$(printf "%04d" $i)
  echo $f
  d=s32/$f
  mkdir $d
  (
    cd $d;
    ln -s ../species.xsd .
    ln -s ../sample.xsd . 
    ln -s ../*HSCV*.xml . 
    ln -s ../species.i . 
    ln -s ../cg.i . 

    # generate random sample
    rseed=$RANDOM
    echo "#rseed=" $rseed > s.i
    ../../h2ofill $rseed 23.46 23.46 23.46 64 4.2 >> s.i
  )
    
done